Prerequisites
You’ll need a laptop with a web browser and a terminal. If you’re doing this tutorial as part of a NeSI workshop (e.g. at eResearchNZ) then please also sign up for a NeSI user account (if you don’t already have one). See the Setup page for detailed instructions.
| Setup | ||
| 00:00 | 1. Introduction to containers | |
| 00:10 | 2. Basics of Singularity | |
| 00:40 | 3. Share files with the host: BLAST, a bioinformatics example | |
| 01:00 | 4. Set up writable containers: another bio example with Trinity | |
| 01:20 | 5. Molecular dynamics with GPU containers | |
| 01:35 | 6. Build your own container image | |
| 02:15 | 7. Computational Fluid Dynamics with MPI containers | |
| 02:35 | 8. GUI enabled applications: RStudio in a container | |
| 02:55 | 9. Making Python not awful with containers | |
| 03:15 | 10. Reproducible scientific workflows | |
| 03:30 | 11. Overview of Docker | |
| 03:50 | 12. Other notable container tools | |
| 04:00 | Finish |
The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.